I've been playing with GEL scripts in V13 a lot the last few days (both from teh command line and through the V13 application) - all works fine as far as I'm concerned compared to earlier versions (so far!).
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Bit confused with your question though ; the command 'gel <filename.xml>' is something you'd type at the command line and has nothing to do with the 'XOG client'. Indeed simple command line GEL scripts aren't even talking "to" Clarity (whatever version).
Have you picked up the simple GEL documents in the ZIP file attached to the
FAQ THREAD? There are a couple of simple scripts in those documents as well as a "hello world" example that can be used to make sure that your local XOG installation is all setup right.