As per the original response, we recommend you register a private enterprise number with IANA and use 1.3.6.1.4.1.*** where *** is the number assigned.
You shouldn't really use 2.5.4.xx as this is reserved by X.500 (default schema), however, you indicated that you had customized schema under 2.5.4.79 (under the X.500 reserved arc) and I suggested that you can just continue adding customized schema to the 2.5.4.79 arc if this is already occurring. Your latest reply seems to indicate that this isn't the case.
The default schema that ships with directory is defined by Internet standards and should not be modified. However, you can use attributes defined in custom object classes as long as the schema is sourced before you custom schema is sourced.
Customized schema should not conflict with the default schema, that is why we recommend registering your own arc under 1.3.6.1.4.1.xxxx.
In summary,
* Register the organization: Private Enterprise Number (PEN) Application Form
* Create attributes, object-classes, name-bindings using 1.3.6.1.4.1.*** where *** is the number assigned above
* If object-classes use default schema shipped with directory, ensure this is sourced before your customized schema