Hi Tenden,
I looked at the install log and it seems it was not upgraded rather just csa was installed and it completed. To upgrade a system you need to start the upgrade pointing existing CA PPM directory.
Done.
execute: remote = false
execute: hosts.xml out of date
execute: Config Mgr setup
execute: read hosts.xml
Deploying service(s)...
Initialized...
Executing ant script
Copying 1 file to /clarity/bin
Copying 1 file to /clarity/bin
Copying 1 file to /clarity/bin
Copying 1 file to /clarity/bin
Copying 1 file to /clarity/bin
Installing Beacon:
Copying 1 file to /clarity/bin
Creating launch configuration: servicebeaconcmd-debug
Copying 1 file to /clarity/bin
Copying 1 file to /clarity/bin
Creating launch configuration: servicebeaconcmd-diag
Copying 1 file to /clarity/bin
Copying 1 file to /clarity/bin
Executed ant script
Updating service: beacon
Done.
---------------------------------------------------
CSA Installation complete.
To continue, point your web browser to:
http://localhost:8090/niku/app.
---------------------------------------------------
Installation Successful - 06-February-2016 23:03:59
BUILD SUCCESSFUL
So when you upgrade it will ask you if you want to use the exsiting CA PPM folder or new which I don't see in the install log. The next step should be
1. Ensure existing CA PPM is up and running
2. Stop all services expect CSA & Beacon
3. Upgrade the 3rd party software like tomcat and Java
4. Start the upgrade.
Hope this helps and let me know if you need any help.
Regards
Suman Pramanik