I'm unclear if you are referring to application load libraries or system ones, but I'm going to assume you mean applications being generated by Endevor.
The easiest thing I can think of is to just remove the GENERATE processor from your production stage and make sure your MOVE does a MOVE, not a GENERATE. Assuming you're running production out of Endevor controlled datasets, you have assurance that the last compile/assemble was done pre-production.
(Not exactly sure if I answered the question or not, though....)