Netflow data from devices only sends the source IP address of a device, not a name.
So when a new IP address is detected NFA Is going to create a new device for that new IP as there is nothing in the Netflow data to associate this device with the original device with the other IP address.
The names only come in afterwards when NFA SNMP polls the device. The best thing to do is merge the interfaces from the older device into the newer device.
Changing this would require NFA to create the new device when it sees a new IP address, then SNMP polls it, then somehow automatically merge interfaces when there is another device with the same name. This would be a major re-architecture in my opinion.